PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_64922.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 46aa    MW: 5402.21 Da    PI: 7.535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_64922.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.5e-121145136
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevike 36
                             +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++
  Rsa1.0_64922.1_g00001.1 11 VPPGFRFHPTEEELLQYYLRKKISNIKIDL-DVIRD 45
                             69*************************999.88877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-12746IPR003441NAC domain
PROSITE profilePS5100515.3111146IPR003441NAC domain
PfamPF023654.5E-81235IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 46 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DVIRDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386422e-49AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBankCP0026862e-49CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544875.13e-25PREDICTED: NAC domain-containing protein 43
SwissprotQ9M2746e-25NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A087GZS55e-25A0A087GZS5_ARAAL; Uncharacterized protein
TrEMBLA0A0D3CTA82e-25A0A0D3CTA8_BRAOL; Uncharacterized protein
STRINGBra007640.1-P3e-24(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.13e-26NAC domain protein 66